4COS Transcription date Jan 30, 2014
title Crystal Structure Of The Phd-Bromo-Pwwp Cassette Of Human Pr
authors T.Krojer, P.Savitsky, J.A.Newman, C.D.O.Cooper, F.Von Delft, C.H.Arrowsmith, C.Bountra, A.Edwards, P.Filippakopoulos
compound source
Molecule: Protein Kinase C-Binding Protein 1
Chain: A
Fragment: Phd-Bromo-Pwwp Domain, Residues 83-406
Synonym: Prkcbp1, Cutaneous T-Cell Lymphoma-Associated Anti Ctcl-Associated Antigen Se14-3, Rack7, Zinc Finger Mynd Dom Containing Protein 8;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.955 68.835 70.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.67 Å
ligand DIO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMultivalent Histone and DNA Engagement by a PHD/BRD/PWWP Triple Reader Cassette Recruits ZMYND8 to K14ac-Rich Chromatin., Savitsky P, Krojer T, Fujisawa T, Lambert JP, Picaud S, Wang CY, Shanle EK, Krajewski K, Friedrichsen H, Kanapin A, Goding C, Schapira M, Samsonova A, Strahl BD, Gingras AC, Filippakopoulos P, Cell Rep. 2016 Dec 6;17(10):2724-2737. doi: 10.1016/j.celrep.2016.11.014. PMID:27926874
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (4cos.pdb1.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 4COS
  • CSU: Contacts of Structural Units for 4COS
  • Structure Factors (2054 Kb)
  • Retrieve 4COS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4COS from S2C, [Save to disk]
  • Re-refined 4cos structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4COS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4COS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4COS, from MSDmotif at EBI
  • Fold representative 4cos from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cos_A] [4cos]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4COS: [BROMO] [PHD] [PWWP ] by SMART
  • Other resources with information on 4COS
  • Community annotation for 4COS at PDBWiki (http://pdbwiki.org)

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