4CRA Creating novel F1 inhibitors through fragment based lead generation and structure aided drug design date
authors Sandmark, J., Oster, L., Fjellstrom, O., Akkaya, S., Beisel, H.G., Eriksson, P.O., Erixon, K., Gustafsson, D., Jurva, U., Kang, D., Karis, D., Knecht, W., Nerme, V., Nilsson, I., Olsson, T., Redzic, A., Roth, R., Tigerstrom, A.
compound source
symmetry
R_factor
R_Free 0.20868
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand GOL, SO4, XJ8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCreating Novel Activated Factor XI Inhibitors through Fragment Based Lead Generation and Structure Aided Drug Design., Fjellstrom O, Akkaya S, Beisel HG, Eriksson PO, Erixon K, Gustafsson D, Jurva U, Kang D, Karis D, Knecht W, Nerme V, Nilsson I, Olsson T, Redzic A, Roth R, Sandmark J, Tigerstrom A, Oster L, PLoS One. 2015 Jan 28;10(1):e0113705. doi: 10.1371/journal.pone.0113705., eCollection 2015. PMID:25629509
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4cra.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (4cra.pdb2.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 4CRA
  • CSU: Contacts of Structural Units for 4CRA
  • Structure Factors (500 Kb)
  • Retrieve 4CRA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CRA from S2C, [Save to disk]
  • Re-refined 4cra structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CRA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CRA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cra_A] [4cra]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CRA: [Tryp_SPc ] by SMART
  • Other resources with information on 4CRA
  • Community annotation for 4CRA at PDBWiki (http://pdbwiki.org)

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