4CRU Gene Regulation date Mar 01, 2014
title Complex Of Human Cnot9 And Cnot1 Including One Tryptophan
authors Y.Chen, A.Boland, E.Izaurralde, O.Weichenrieder
compound source
Molecule: Ccr4-Not Transcription Complex Subunit 1
Chain: A
Fragment: Cnot1 Cn9bd Domain, Duf3819, Residues 1356-1607
Synonym: Cnot1, Ccr4-Associated Factor 1, Negative Regulato Transcription Subunit 1 Homolog, Not1h, Hnot1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn(Pnyc)

Molecule: Cell Differentiation Protein Rcd1 Homolog
Chain: B
Fragment: Cnot9 Arm Domain, Residues 19-285
Synonym: Cnot9, Caf40 Homologg, Rcd-1, Ccr4-Not Transcripti Complex Subunit 9, Rcd-1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn(Pnea)
symmetry Space Group: C 1 2 1
R_factor 0.1596 R_Free 0.1788
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.800 67.240 72.300 90.00 99.64 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceA DDX6-CNOT1 Complex and W-Binding Pockets in CNOT9 Reveal Direct Links between miRNA Target Recognition and Silencing., Chen Y, Boland A, Kuzuoglu-Ozturk D, Bawankar P, Loh B, Chang CT, Weichenrieder O, Izaurralde E, Mol Cell. 2014 Apr 22. pii: S1097-2765(14)00267-6. doi:, 10.1016/j.molcel.2014.03.034. PMID:24768540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk]
  • Biological Unit Coordinates (4cru.pdb1.gz) 263 Kb
  • LPC: Ligand-Protein Contacts for 4CRU
  • CSU: Contacts of Structural Units for 4CRU
  • Structure Factors (660 Kb)
  • Retrieve 4CRU in mmCIF format [Save to disk]
  • Re-refined 4cru structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CRU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CRU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CRU, from MSDmotif at EBI
  • Fold representative 4cru from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cru_B] [4cru_A] [4cru]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4CRU
  • Community annotation for 4CRU at PDBWiki (http://pdbwiki.org)

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