4CSR Transcription date Mar 09, 2014
title High Resolution Crystal Structure Of The Histone Fold Dimer (Nf-Yb)-(Nf-Yc)
authors N.Gnesutta, S.Cocolo, R.Mantovani, M.Bolognesi, M.Nardini
compound source
Molecule: Nuclear Transcription Factor Y Subunit Beta
Chain: A
Fragment: Residues 49-141
Synonym: Ccaat Box Dna-Binding Protein Subunit B, Nuclear Transcription Factory Subunit B, Nf-Yb, Nuclear Transcript Factory Subunit B;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Transcription Factor Y Subunit Gamma
Chain: B
Fragment: Residues 27-120
Synonym: Ccaat Box Dna-Binding Protein Subunit C, Nuclear Transcription Factor Y Subunit C, Nf-Yc, Transactivator Hs Nuclear Transcription Factor Y Subunit C;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.14462 R_Free 0.18432
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.670 60.800 61.610 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceSequence-Specific Transcription Factor NF-Y Displays Histone-like DNA Binding and H2B-like Ubiquitination., Nardini M, Gnesutta N, Donati G, Gatta R, Forni C, Fossati A, Vonrhein C, Moras D, Romier C, Bolognesi M, Mantovani R, Cell. 2013 Jan 17;152(1-2):132-43. doi: 10.1016/j.cell.2012.11.047. PMID:23332751
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4csr.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4CSR
  • CSU: Contacts of Structural Units for 4CSR
  • Structure Factors (578 Kb)
  • Retrieve 4CSR in mmCIF format [Save to disk]
  • Re-refined 4csr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CSR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CSR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CSR, from MSDmotif at EBI
  • Fold representative 4csr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4csr_A] [4csr] [4csr_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4CSR
  • Community annotation for 4CSR at PDBWiki (http://pdbwiki.org)

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