4CSU Ribosome date Mar 10, 2014
title Cryo-Em Structures Of The 50s Ribosome Subunit Bound With Ob
authors B.Feng, C.S.Mandava, Q.Guo, J.Wang, W.Cao, N.Li, Y.Zhang, Y.Zhang, Z J.Wu, S.Sanyal, J.Lei, N.Gao
compound source
Molecule: 50s Ribosomal Protein L28
Chain
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L29
Chain: 1

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L30
Chain: 2

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L32
Chain: 3

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L33
Chain: 4

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L1
Chain: 5

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L34
Chain: 6
Synonym: Ribosomal Protein A

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L35
Chain: 7

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L36
Chain: 8
Synonym: Ribosomal Protein B

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: Gtpase Obgecgta
Chain: 9
Synonym: Gtp-Binding Protein Obg, Obge
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: 5s Rrna
Chain: A

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 23s Rrna
Chain: B

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L2
Chain: C

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L3
Chain: D

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L4
Chain: E

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L5
Chain: F

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L6
Chain: G

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L9
Chain: H

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L11
Chain: I

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L13
Chain: J

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L14
Chain: K

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L15
Chain: L

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L16
Chain: M

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L17
Chain: N

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L18
Chain: O

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L19
Chain: P

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L20
Chain: Q

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L21
Chain: R

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L22
Chain: S

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L23
Chain: T

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L24
Chain: U

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L25
Chain: W

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12

Molecule: 50s Ribosomal Protein L27
Chain: Y

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.50 Å
Gene
Ontology
ChainFunctionProcessComponent
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1


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5


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7


8


9


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q
  • translation repressor activi...


  • R


    S


    T


    U


    W


    Y


    Primary referenceStructural and Functional Insights into the Mode of Action of a Universally Conserved Obg GTPase., Feng B, Mandava CS, Guo Q, Wang J, Cao W, Li N, Zhang Y, Zhang Y, Wang Z, Wu J, Sanyal S, Lei J, Gao N, PLoS Biol. 2014 May 20;12(5):e1001866. doi: 10.1371/journal.pbio.1001866., eCollection 2014 May. PMID:24844575
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1598 Kb) [Save to disk]
  • Biological Unit Coordinates (4csu.pdb1.gz) 1589 Kb
  • CSU: Contacts of Structural Units for 4CSU
  • Retrieve 4CSU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CSU from S2C, [Save to disk]
  • View 4CSU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CSU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CSU, from MSDmotif at EBI
  • Fold representative 4csu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4csu_H] [4csu_Q] [4csu_M] [4csu_J] [4csu_2] [4csu_U] [4csu_K] [4csu_L] [4csu_D] [4csu_G] [4csu_5] [4csu_8] [4csu_N] [4csu_P] [4csu] [4csu_I] [4csu_3] [4csu_F] [4csu_T] [4csu_E] [4csu_A] [4csu_1] [4csu_W] [4csu_Y] [4csu_C] [4csu_0] [4csu_O] [4csu_4] [4csu_6] [4csu_R] [4csu_S] [4csu_B] [4csu_9] [4csu_7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CSU: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
  • Other resources with information on 4CSU
  • Community annotation for 4CSU at PDBWiki (http://pdbwiki.org)

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