4CT7 Transcription date Mar 12, 2014
title Cnot9-Cnot1 Complex With Bound Tryptophan
authors J.Basquin, S.Ozgur, E.Conti
compound source
Molecule: Ccr4-Not Transcription Complex Subunit 1
Chain: A
Fragment: Cnot1-Cn9bd Domain Residues 1352-1594
Synonym: Ccr4-Associated Factor 1, Negative Regulator Of Transcription Subunit 1 Homolog, Not1h, Hnot1, Cnot1-Cn9bd
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet Based
Expression_system_plasmid: Pec_his_gst

Molecule: Cell Differentiation Protein Rcd1 Homolog
Chain: B
Fragment: Cnot9, Residues 16-285
Synonym: Rcd-1, Ccr4-Not Transcription Complex Subunit 9, C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet Based
Expression_system_plasmid: Pec_his_sumo
symmetry Space Group: C 1 2 1
R_factor 0.1833 R_Free 0.2206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.031 66.984 72.653 90.00 99.85 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MES, TRP enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural and Biochemical Insights to the Role of the CCR4-NOT Complex and DDX6 ATPase in MicroRNA Repression., Mathys H, Basquin J, Ozgur S, Czarnocki-Cieciura M, Bonneau F, Aartse A, Dziembowski A, Nowotny M, Conti E, Filipowicz W, Mol Cell. 2014 Apr 22. pii: S1097-2765(14)00269-X. doi:, 10.1016/j.molcel.2014.03.036. PMID:24768538
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (4ct7.pdb1.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 4CT7
  • CSU: Contacts of Structural Units for 4CT7
  • Structure Factors (1545 Kb)
  • Retrieve 4CT7 in mmCIF format [Save to disk]
  • Re-refined 4ct7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CT7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CT7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CT7, from MSDmotif at EBI
  • Fold representative 4ct7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ct7] [4ct7_A] [4ct7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4CT7
  • Community annotation for 4CT7 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science