4CY2 Transcription date Apr 09, 2014
title Crystal Structure Of The Kansl1-Wdr5-Kansl2 Complex.
authors J.Dias, J.Brettschneider, S.Cusack, J.Kadlec
compound source
Molecule: Wd Repeat-Containing Protein 5
Chain: A
Fragment: Residues 23-334
Synonym: Bmp2-Induced 3-Kb Gene Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproexhtb

Molecule: Kat8 Regulatory Nsl Complex Subunit 2
Chain: C
Fragment: Residues 406-417
Synonym: Kansl2, Nsl Complex Protein Nsl2, Non-Specific Let Homolog;

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Kat8 Regulatory Nsl Complex Subunit 1
Chain: D
Fragment: Residues 585-598
Synonym: Kansl1, Mll1mll Complex Subunit Kansl1, Msl1 Homo Hmsl1v1, Nsl Complex Protein Nsl1, Non-Specific Lethal 1 H

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.19939 R_Free 0.22183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.590 86.600 45.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of the KANSL1/WDR5/KANSL2 complex reveals that WDR5 is required for efficient assembly and chromatin targeting of the NSL complex., Dias J, Van Nguyen N, Georgiev P, Gaub A, Brettschneider J, Cusack S, Kadlec J, Akhtar A, Genes Dev. 2014 May 1;28(9):929-42. doi: 10.1101/gad.240200.114. PMID:24788516
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (4cy2.pdb1.gz) 105 Kb
  • CSU: Contacts of Structural Units for 4CY2
  • Structure Factors (658 Kb)
  • Retrieve 4CY2 in mmCIF format [Save to disk]
  • Re-refined 4cy2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CY2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CY2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CY2, from MSDmotif at EBI
  • Fold representative 4cy2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cy2_D] [4cy2] [4cy2_A] [4cy2_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CY2: [WD40 ] by SMART
  • Other resources with information on 4CY2
  • Community annotation for 4CY2 at PDBWiki (http://pdbwiki.org)

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