4CYC CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS date
authors Foos, N., Mate, M.J., Ortiz-Lombardia, M.
compound source
symmetry
R_factor
R_Free 0.2268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.36
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceA Flexible Extension of the Drosophila Ultrabithorax Homeodomain Defines a Novel Hox/PBC Interaction Mode., Foos N, Maurel-Zaffran C, Mate MJ, Vincentelli R, Hainaut M, Berenger H, Pradel J, Saurin AJ, Ortiz-Lombardia M, Graba Y, Structure. 2015 Feb 3;23(2):270-9. doi: 10.1016/j.str.2014.12.011. PMID:25651060
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (4cyc.pdb1.gz) 74 Kb
  • CSU: Contacts of Structural Units for 4CYC
  • Structure Factors (883 Kb)
  • Retrieve 4CYC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CYC from S2C, [Save to disk]
  • Re-refined 4cyc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CYC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CYC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CYC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cyc_D] [4cyc] [4cyc_A] [4cyc_B] [4cyc_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CYC: [HOX ] by SMART
    • Other resources with information on 4CYC
  • Community annotation for 4CYC at PDBWiki (http://pdbwiki.org)

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