4CYY The structure of vanin-1: defining the link between metabolic disease, oxidative stress and inflammation date
authors Boersma, Y.L., Newman, J., Adams, T.E., Sparrow, L., Cowieson, N., Lucent, D., Krippner, G., Bozaoglu, K., Peat, T.S.
compound source
symmetry
R_factor
R_Free 0.21883
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.89
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of vanin 1: a key enzyme linking metabolic disease and inflammation., Boersma YL, Newman J, Adams TE, Cowieson N, Krippner G, Bozaoglu K, Peat TS, Acta Crystallogr D Biol Crystallogr. 2014 Dec 1;70(Pt 12):3320-9. doi:, 10.1107/S1399004714022767. Epub 2014 Nov 28. PMID:25478849
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4cyy.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 4CYY
  • CSU: Contacts of Structural Units for 4CYY
  • Structure Factors (350 Kb)
  • Retrieve 4CYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CYY from S2C, [Save to disk]
  • Re-refined 4cyy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CYY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CYY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cyy_A] [4cyy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4CYY
  • Community annotation for 4CYY at PDBWiki (http://pdbwiki.org)

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