4D10 Crystal structure of the COP9 signalosome date
authors Bunker, R.D., Lingaraju, G.M., Thoma, N.H.
compound source
symmetry
R_factor
R_Free 0.22750
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.80
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, I
  • GTPase inhibitor activity


  • E, M
  • translation initiation facto...


  • F, N


    J, B


    K, C


    L, D


    O, G


    P, H


    Primary referenceCrystal structure of the human COP9 signalosome., Lingaraju GM, Bunker RD, Cavadini S, Hess D, Hassiepen U, Renatus M, Fischer ES, Thoma NH, Nature. 2014 Jul 16. doi: 10.1038/nature13566. PMID:25043011
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1708 Kb) [Save to disk]
  • Biological Unit Coordinates (4d10.pdb1.gz) 823 Kb
  • Biological Unit Coordinates (4d10.pdb2.gz) 883 Kb
  • LPC: Ligand-Protein Contacts for 4D10
  • CSU: Contacts of Structural Units for 4D10
  • Structure Factors (2720 Kb)
  • Retrieve 4D10 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D10 from S2C, [Save to disk]
  • Re-refined 4d10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4D10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4D10
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D10, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d10_P] [4d10_O] [4d10_F] [4d10_B] [4d10_D] [4d10_C] [4d10_G] [4d10] [4d10_M] [4d10_A] [4d10_H] [4d10_E] [4d10_N] [4d10_I] [4d10_J] [4d10_K] [4d10_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4D10: [JAB_MPN] [PAM] [PINT ] by SMART
  • Other resources with information on 4D10
  • Community annotation for 4D10 at PDBWiki (http://pdbwiki.org)

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