4D2P	Structure of MELK in complex with inhibitors	date
authors	Johnson, C.N., Berdini, V., Beke, L., Bonnet, P., Brehmer, D., Coyle, J.E., Day, P.J., Frederickson, M., Freyne, E.J.E., Gilissen, R.A.H.J., Hamlett, C.C.F., Howard, S., Meerpoel, L., McMenamin, R., Patel, S., Rees, D.C., Sharff, A., Sommen, F., Wu, T., Linders, J.T.M.
compound		source
symmetry		R_factor R_Free 0.3117
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.55
ligand	6Z7	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Fragment-based discovery of type I inhibitors of maternal embryonic leucine zipper kinase., Johnson CN, Berdini V, Beke L, Bonnet P, Brehmer D, Coyle JE, Day PJ, Frederickson M, Freyne EJ, Gilissen RA, Hamlett CC, Howard S, Meerpoel L, McMenamin R, Patel S, Rees DC, Sharff A, Sommen F, Wu T, Linders JT, ACS Med Chem Lett. 2014 May 23;6(1):25-30. doi: 10.1021/ml5001245. eCollection, 2015 Jan 8. PMID:25589925

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (450 Kb) [Save to disk] Biological Unit Coordinates (4d2p.pdb1.gz) 223 Kb Biological Unit Coordinates (4d2p.pdb2.gz) 221 Kb LPC: Ligand-Protein Contacts for 4D2P CSU: Contacts of Structural Units for 4D2P Structure Factors (718 Kb) Retrieve 4D2P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4D2P from S2C, [Save to disk] Re-refined 4d2p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4D2P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4D2P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4D2P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4d2p_C] [4d2p] [4d2p_B] [4d2p_D] [4d2p_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4D2P: [S_TKc ] by SMART

Other resources with information on 4D2P

Community annotation for 4D2P at PDBWiki (http://pdbwiki.org)

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