4D4C The catalytic domain, BcGH76, of Bacillus circulans Aman6 in complex with 1,6-ManDMJ date
authors Thompson, A.J., Speciale, G., Iglesias-Fernandez, J., Hakki, Z., Belz, T., Cartmell, A., Spears, R.J., Stepper, J., Gilbert, H.J., Rovira, C., Williams, S.J., Davies, G.J.
compound source
symmetry
R_factor
R_Free 0.20949
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.30
ligand DMJ, EDO, MAN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEvidence for a Boat Conformation at the Transition State of GH76 alpha-1,6-Mannanases-Key Enzymes in Bacterial and Fungal Mannoprotein Metabolism., Thompson AJ, Speciale G, Iglesias-Fernandez J, Hakki Z, Belz T, Cartmell A, Spears RJ, Chandler E, Temple MJ, Stepper J, Gilbert HJ, Rovira C, Williams SJ, Davies GJ, Angew Chem Int Ed Engl. 2015 Mar 13. doi: 10.1002/anie.201410502. PMID:25772148
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (250 Kb) [Save to disk]
  • Biological Unit Coordinates (4d4c.pdb1.gz) 123 Kb
  • Biological Unit Coordinates (4d4c.pdb2.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 4D4C
  • CSU: Contacts of Structural Units for 4D4C
  • Structure Factors (3228 Kb)
  • Retrieve 4D4C in mmCIF format [Save to disk]
  • Re-refined 4d4c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D4C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4D4C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D4C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d4c_A] [4d4c] [4d4c_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4D4C
  • Community annotation for 4D4C at PDBWiki (http://pdbwiki.org)

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