4D4Z	Oxidoreductase	date	Oct 31, 2014
title	Structure Of Human Deoxyhypusine Hydroxylase In Complex With
authors	Z.Han, N.Sakai, R.Hilgenfeld
compound		source
Molecule: Deoxyhypusine Hydroxylase Chain: A, B Synonym: Hdohh, Deoxyhypusine Dioxygenase, Deoxyhypusine Monooxygenase, Heat-Like Repeat-Containing Protein 1; Ec: 1.14.99.29 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Pgex-6p-1
symmetry	Space Group: P 1 21 1	R_factor 0.17024 R_Free 0.19283
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.051 70.175 101.275 90.00 102.71 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	B3P, FE, GOL, OH	enzyme	Oxidoreductase E.C.1.14.99.29 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structure of the Peroxo-diiron(III) Intermediate of Deoxyhypusine Hydroxylase, an Oxygenase Involved in Hypusination., Han Z, Sakai N, Bottger LH, Klinke S, Hauber J, Trautwein AX, Hilgenfeld R, Structure. 2015 Apr 9. pii: S0969-2126(15)00080-5. doi:, 10.1016/j.str.2015.03.002. PMID:25865244

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (4d4z.pdb1.gz) 51 Kb Biological Unit Coordinates (4d4z.pdb2.gz) 50 Kb LPC: Ligand-Protein Contacts for 4D4Z CSU: Contacts of Structural Units for 4D4Z Structure Factors (1268 Kb) Retrieve 4D4Z in mmCIF format [Save to disk] Re-refined 4d4z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4D4Z in 3D

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Visual 3D analysis of 4D4Z

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4D4Z, from MSDmotif at EBI Fold representative 4d4z from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4d4z_B] [4d4z] [4d4z_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4D4Z: [EZ_HEAT ] by SMART

Other resources with information on 4D4Z

Community annotation for 4D4Z at PDBWiki (http://pdbwiki.org)

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