4D5M	Hormone	date	Nov 05, 2014
title	Gonadotropin-Releasing Hormone Agonist
authors	P.Legrand, M.H.Le Du, C.Valery, S.Deville-Foillard, M.Paternost F.Artzner
compound		source
Molecule: Triptorelin Chain: A, B, C, D Engineered: Yes Other_details: Triptorelin Is A Medicine Available In A Num Countries Worldwide. It Is An Analogous Of The Gonadotropin Hormone. 5-Oxo-D-Prolyl-L-Histidyl-L-Tryptophanyl-L-Seryl-L D-Tryptophanyl-L-Leucyl-L-Arginyl-L-Prolyl-L-Glycinamide.		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Triptorelin Is A Medicine Available In A Num Countries Worldwide.
symmetry	Space Group: C 1 2 1	R_factor 0.080 R_Free 0.087
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.900 27.470 13.150 90.00 98.83 90.00
method	X-Ray Diffraction	resolution	0.85 Å
ligand	DTR, NH2, PCA, PO4	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Atomic view of the histidine environment stabilizing higher-pH conformations of pH-dependent proteins., Valery C, Deville-Foillard S, Lefebvre C, Taberner N, Legrand P, Meneau F, Meriadec C, Delvaux C, Bizien T, Kasotakis E, Lopez-Iglesias C, Gall A, Bressanelli S, Le Du MH, Paternostre M, Artzner F, Nat Commun. 2015 Jul 20;6:7771. doi: 10.1038/ncomms8771. PMID:26190377

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk] Biological Unit Coordinates (4d5m.pdb1.gz) 11 Kb Biological Unit Coordinates (4d5m.pdb2.gz) 10 Kb Biological Unit Coordinates (4d5m.pdb3.gz) 8 Kb Biological Unit Coordinates (4d5m.pdb4.gz) 8 Kb LPC: Ligand-Protein Contacts for 4D5M CSU: Contacts of Structural Units for 4D5M Structure Factors (484 Kb) Retrieve 4D5M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4D5M from S2C, [Save to disk] Re-refined 4d5m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4D5M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4D5M

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 4d5m from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4d5m_D] [4d5m_A] [4d5m_C] [4d5m] [4d5m_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4D5M

Community annotation for 4D5M at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014 Bioinformatics Unit Weizmann Institute of Science

---