4D8O Protein Binding date Jan 11, 2012
title Crystal Structure Of The Ankyrin-B Zu5-Zu5-Upa-Dd Tandem
authors Z.Wei, C.Wang, C.Yu, M.Zhang
compound source
Molecule: Ankyrin-2
Chain: A
Fragment: Residues 966-1535
Synonym: Ank-2, Ankyrin-B, Brain Ankyrin, Non-Erythroid Ank
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ank2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.674 80.056 94.988 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the ZU5-ZU5-UPA-DD tandem of ankyrin-B reveals interaction surfaces necessary for ankyrin function., Wang C, Yu C, Ye F, Wei Z, Zhang M, Proc Natl Acad Sci U S A. 2012 Mar 12. PMID:22411828
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (4d8o.pdb1.gz) 170 Kb
  • CSU: Contacts of Structural Units for 4D8O
  • Structure Factors (1303 Kb)
  • Retrieve 4D8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D8O from S2C, [Save to disk]
  • Re-refined 4d8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4D8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4D8O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4D8O, from MSDmotif at EBI
  • Fold representative 4d8o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d8o] [4d8o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4D8O: [DEATH] [ZU5 ] by SMART
  • Other resources with information on 4D8O
  • Community annotation for 4D8O at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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