4D9T	Transferase Transferase Inhibitor	date	Jan 12, 2012
title	Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl 3-(4 (3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,3-D]Pyrimidin-6-Yl Cyanoacrylate
authors	I.M.Serafimova, M.A.Pufall, S.Krishnan, K.Duda, M.S.Cohen, R.L.Ma J.M.Mcfarland, R.M.Miller, M.Frodin, J.Taunton
compound		source
Molecule: Ribosomal Protein S6 Kinase Alpha-3 Chain: A Fragment: C-Terminal Kinase Domain, Unp Residues 399-740 Synonym: S6k-Alpha-3, 90 Kda Ribosomal Protein S6 Kinase 3, 3, P90rsk3, Insulin-Stimulated Protein Kinase 1, Ispk-1, Ma Activated Protein Kinase 1b, Mapk-Activated Protein Kinase Kinase 1b, Mapkapk-1b, Ribosomal S6 Kinase 2, Rsk-2, Pp90rs Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ispk1, Mapkapk1b, Rps6ka3, Rsk2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet46
symmetry	Space Group: P 41 21 2	R_factor 0.216 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.700 46.700 294.100 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	0JG, NA	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Reversible targeting of noncatalytic cysteines with chemically tuned electrophiles., Serafimova IM, Pufall MA, Krishnan S, Duda K, Cohen MS, Maglathlin RL, McFarland JM, Miller RM, Frodin M, Taunton J, Nat Chem Biol. 2012 Apr 1;8(5):471-6. doi: 10.1038/nchembio.925. PMID:22466421

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (4d9t.pdb1.gz) 103 Kb Biological Unit Coordinates (4d9t.pdb2.gz) 203 Kb LPC: Ligand-Protein Contacts for 4D9T CSU: Contacts of Structural Units for 4D9T Structure Factors (96 Kb) Retrieve 4D9T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4D9T from S2C, [Save to disk] Re-refined 4d9t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 4D9T

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4D9T, from MSDmotif at EBI Fold representative 4d9t from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4d9t] [4d9t_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4D9T: [S_TKc ] by SMART

Other resources with information on 4D9T

Community annotation for 4D9T at PDBWiki (http://pdbwiki.org)

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