4DAJ Signaling Protein, Hydrolase date Jan 12, 2012
title Structure Of The M3 Muscarinic Acetylcholine Receptor
authors A.C.Kruse, J.Hu, A.C.Pan, D.H.Arlow, D.M.Rosenbaum, E.Rosemond, H. T.Liu, P.S.Chae, R.O.Dror, D.E.Shaw, W.I.Weis, J.Wess, B.Kobilka
compound source
Molecule: Muscarinic Acetylcholine Receptor M3, Lysozyme
Chain: A, B, C, D
Fragment: P08483 Residues 57-259, 482-589, P00720 Residues
Synonym: Endolysin, Lysis Protein, Muramidase
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Other_details: Chimeric Protein
Organism_scientific: Rattus Norvegicus, Enterobacteria Phag
Organism_common: Brown Rat,Rat,Rats
Organism_taxid: 10116, 10665
Gene: Chrm-3, Chrm3, E
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_plasmid: Pvl1392
symmetry Space Group: P 1
R_factor 0.251 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.770 61.310 176.910 85.87 89.90 84.90
method X-Ray Diffractionresolution 3.40 Å
ligand 0HK, PO4 enzyme Hydrolase E.C.3.2.1.17 BRENDA
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure and dynamics of the M3 muscarinic acetylcholine receptor., Kruse AC, Hu J, Pan AC, Arlow DH, Rosenbaum DM, Rosemond E, Green HF, Liu T, Chae PS, Dror RO, Shaw DE, Weis WI, Wess J, Kobilka BK, Nature. 2012 Feb 22;482(7386):552-6. doi: 10.1038/nature10867. PMID:22358844
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (4daj.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (4daj.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (4daj.pdb3.gz) 71 Kb
  • Biological Unit Coordinates (4daj.pdb4.gz) 73 Kb
  • Biological Unit Coordinates (4daj.pdb5.gz) 141 Kb
  • Biological Unit Coordinates (4daj.pdb6.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 4DAJ
  • CSU: Contacts of Structural Units for 4DAJ
  • Structure Factors (214 Kb)
  • Retrieve 4DAJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DAJ from S2C, [Save to disk]
  • Re-refined 4daj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DAJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DAJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DAJ, from MSDmotif at EBI
  • Fold representative 4daj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4daj_C] [4daj_D] [4daj_B] [4daj_A] [4daj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DAJ
  • Community annotation for 4DAJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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