4DAY Protein Binding Hydrolase date Jan 13, 2012
title Crystal Structure Of The Rmi Core Complex With Mm2 Peptide F
authors K.A.Hoadley, J.L.Keck
compound source
Molecule: Recq-Mediated Genome Instability Protein 1
Chain: A
Fragment: C-Terminal Ob Domain (Residues 473-625)
Synonym: Blm-Associated Protein Of 75 Kda, Blap75, Faap75
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rmi1, C9orf76
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Recq-Mediated Genome Instability Protein 2
Chain: B
Synonym: Hrmi2, Blm-Associated Protein Of 18 Kda, Blap18
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rmi2, C16orf75
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fanconi Anemia Group M Protein
Chain: C
Fragment: Mm2 Peptide (Residues 1218-1251)
Synonym: Protein Facm, Atp-Dependent Rna Helicase Fancm, Fa Anemia-Associated Polypeptide Of 250 Kda, Faap250, Protein Ortholog;
Ec: 3.6.4.13
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fancm, Kiaa1596
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 21 21 21
R_factor 0.217 R_Free 0.325
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.312 96.440 99.025 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand
enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDefining the molecular interface that connects the Fanconi anemia protein FANCM to the Bloom syndrome dissolvasome., Hoadley KA, Xue Y, Ling C, Takata M, Wang W, Keck JL, Proc Natl Acad Sci U S A. 2012 Mar 20;109(12):4437-42. Epub 2012 Mar 5. PMID:22392978
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (4day.pdb1.gz) 90 Kb
  • CSU: Contacts of Structural Units for 4DAY
  • Structure Factors (88 Kb)
  • Retrieve 4DAY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DAY from S2C, [Save to disk]
  • Re-refined 4day structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DAY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DAY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DAY, from MSDmotif at EBI
  • Fold representative 4day from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4day_B] [4day_A] [4day] [4day_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DAY
  • Community annotation for 4DAY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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