4DB1 Contractile Protein date Jan 13, 2012
title Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Am
authors V.A.Klenchin, J.C.Deacon, A.C.Combs, L.A.Leinwand, I.Rayment
compound source
Molecule: Myosin-7
Chain: A, B
Fragment: Unp Residues 2-783
Synonym: Myosin Heavy Chain 7, Myosin Heavy Chain Slow Isof Slow, Myosin Heavy Chain, Cardiac Muscle Beta Isoform, Myhc
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myh7, Myhcb
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_strain: C2c12 Cells
Expression_system_vector_type: Adenovirus
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.206 94.310 110.894 90.00 112.29 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ANP, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (472 Kb) [Save to disk]
  • Biological Unit Coordinates (4db1.pdb1.gz) 236 Kb
  • Biological Unit Coordinates (4db1.pdb2.gz) 232 Kb
  • Biological Unit Coordinates (4db1.pdb3.gz) 464 Kb
  • LPC: Ligand-Protein Contacts for 4DB1
  • CSU: Contacts of Structural Units for 4DB1
  • Structure Factors (709 Kb)
  • Retrieve 4DB1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DB1 from S2C, [Save to disk]
  • Re-refined 4db1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DB1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DB1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DB1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k4db1, region B:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1t4db1, region B:1-133,B:355-367 [Jmol] [rasmolscript] [script source]
  • Fold representative 4db1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4db1_A] [4db1] [4db1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DB1: [MYSc ] by SMART
  • Other resources with information on 4DB1
  • Community annotation for 4DB1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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