4DCK Transport Protein Signaling Protein date Jan 17, 2012
title Crystal Structure Of The C-Terminus Of Voltage-Gated Sodium Complex With Fgf13 And Cam
authors B.C.Chung, C.Wang, H.Yan, G.S.Pitt, S.Y.Lee
compound source
Molecule: Sodium Channel Protein Type 5 Subunit Alpha
Chain: A
Fragment: C-Terminal Domain Of Nav1.5
Synonym: Hh1, Sodium Channel Protein Cardiac Muscle Subunit Sodium Channel Protein Type V Subunit Alpha, Voltage-Gated Channel Subunit Alpha Nav1.5;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Scn5a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Calmodulin
Chain: B
Fragment: Calmodulin
Synonym: Cam
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Calm1, Calm, Cam, Cam1, Calm2, Cam2, Camb, Calm3, Cal Cam3, Camc, Camiii;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fibroblast Growth Factor 13
Chain: C
Fragment: Fgf13
Synonym: Fgf-13, Fibroblast Growth Factor Homologous Factor
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf13, Fhf2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 3
R_factor 0.210 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.041 126.041 126.041 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • positive regulation of ryano...

  • C


    Primary referenceCrystal Structure of the Ternary Complex of a NaV C-Terminal Domain, a Fibroblast Growth Factor Homologous Factor, and Calmodulin., Wang C, Chung BC, Yan H, Lee SY, Pitt GS, Structure. 2012 Jun 14. PMID:22705208
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4dck.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (4dck.pdb2.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 4DCK
  • CSU: Contacts of Structural Units for 4DCK
  • Structure Factors (255 Kb)
  • Retrieve 4DCK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DCK from S2C, [Save to disk]
  • Re-refined 4dck structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DCK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DCK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DCK, from MSDmotif at EBI
  • Fold representative 4dck from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dck] [4dck_A] [4dck_B] [4dck_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4DCK: [EFh] [FGF] [IQ ] by SMART
  • Other resources with information on 4DCK
  • Community annotation for 4DCK at PDBWiki (http://pdbwiki.org)
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