4DDU date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ZN enzyme
Gene TM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling., Rudolph MG, Del Toro Duany Y, Jungblut SP, Ganguly A, Klostermeier D, Nucleic Acids Res. 2012 Dec 2. PMID:23209025
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (384 Kb) [Save to disk]
  • Biological Unit Coordinates (4ddu.pdb1.gz) 379 Kb
  • LPC: Ligand-Protein Contacts for 4DDU
  • CSU: Contacts of Structural Units for 4DDU
  • Structure Factors (944 Kb)
  • Retrieve 4DDU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DDU from S2C, [Save to disk]
  • Re-refined 4ddu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DDU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ddu] [4ddu_A]
  • SWISS-PROT database:
  • Domains found in 4DDU: [AAA] [DEXDc] [TOP1Ac] [TOP1Bc] [TOPRIM ] by SMART

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