4DGD TRIMCyp cyclophilin domain from Macaca mulatta: H70C mutant date 2012-01-25
authors Caines, M.E.C., Bichel, K., Price, A.J., McEwan, W.A., James, L.C.
compound source
symmetry
R_factor
R_Free 0.1683
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiverse HIV viruses are targeted by a conformationally dynamic antiviral., Caines ME, Bichel K, Price AJ, McEwan WA, Towers GJ, Willett BJ, Freund SM, James LC, Nat Struct Mol Biol. 2012 Mar 11. doi: 10.1038/nsmb.2253. PMID:22407016
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (4dgd.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 4DGD
  • CSU: Contacts of Structural Units for 4DGD
  • Structure Factors (1470 Kb)
  • Retrieve 4DGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DGD from S2C, [Save to disk]
  • Re-refined 4dgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DGD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DGD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dgd_A] [4dgd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DGD
  • Community annotation for 4DGD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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