4DHY Transferase Transferase Activator date Jan 30, 2012
title Crystal Structure Of Human Glucokinase In Complex With Gluco Activator
authors S.Liu
compound source
Molecule: Glucokinase
Chain: A
Fragment: Unp Residues 12-465
Synonym: Hexokinase Type Iv, Hk Iv, Hexokinase-4, Hk4, Hexo
Ec: 2.7.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gck
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.010 82.200 86.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.38 Å
ligand GLC, NA, S41 BindingDB enzyme Transferase E.C.2.7.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInsights into the mechanism of glucokinase activation: observation of multiple distinct protein conformations., Liu S, Ammirati MJ, Song X, Knafels JD, Zhang J, Greasley SE, Pfefferkorn JA, Qiu X, J Biol Chem. 2012 Feb 1. PMID:22298776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (4dhy.pdb1.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 4DHY
  • CSU: Contacts of Structural Units for 4DHY
  • Structure Factors (366 Kb)
  • Retrieve 4DHY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DHY from S2C, [Save to disk]
  • Re-refined 4dhy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DHY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DHY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DHY, from MSDmotif at EBI
  • Fold representative 4dhy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dhy_A] [4dhy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DHY
  • Community annotation for 4DHY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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