4DJH Hormone Receptor Antagonist date Feb 01, 2012
title Structure Of The Human Kappa Opioid Receptor In Complex With
authors H.Wu, D.Wacker, V.Katritch, M.Mileni, G.W.Han, E.Vardy, W.Liu, A.A. X.P.Huang, F.I.Carroll, S.W.Mascarella, R.B.Westkaemper, P.D.Mo B.L.Roth, V.Cherezov, R.C.Stevens, Gpcr Network (Gpcr)
compound source
Molecule: Kappa-Type Opioid Receptor, Lysozyme
Chain: A, B
Fragment: Unp P41145 Residues 43-261, Unp P00720 Residues 2 P41145 Residues 362-358;
Synonym: K-Or-1, Kor-1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human, Bacteriophage T4
Organism_taxid: 9606, 10665
Gene: Oprk, Oprk1, Oprk, E
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 21 21 21
R_factor 0.227 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.896 147.297 205.288 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CIT, JDC, OLC, PEG BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the human kappa-opioid receptor in complex with JDTic., Wu H, Wacker D, Mileni M, Katritch V, Han GW, Vardy E, Liu W, Thompson AA, Huang XP, Carroll FI, Mascarella SW, Westkaemper RB, Mosier PD, Roth BL, Cherezov V, Stevens RC, Nature. 2012 Mar 21;485(7398):327-32. doi: 10.1038/nature10939. PMID:22437504
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (309 Kb) [Save to disk]
  • Biological Unit Coordinates (4djh.pdb1.gz) 301 Kb
  • Biological Unit Coordinates (4djh.pdb2.gz) 302 Kb
  • LPC: Ligand-Protein Contacts for 4DJH
  • CSU: Contacts of Structural Units for 4DJH
  • Structure Factors (484 Kb)
  • Retrieve 4DJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DJH from S2C, [Save to disk]
  • Re-refined 4djh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DJH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DJH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DJH, from MSDmotif at EBI
  • Fold representative 4djh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4djh_B] [4djh_A] [4djh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DJH
  • Community annotation for 4DJH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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