4DKT Crystal structure of human peptidylarginine deiminase 4 in complex with N-acetyl-L-threonyl-L-alpha-aspartyl-N5-[(1E)-2-fluoroethanimidoyl]-L-ornithinamide date
authors Jones, J.E., Slack, J.L., Fang, P., Zhang, X., Subramanian, V., Causey, C.P., Coonrod, S.A., Guo, M., Thompson, P.R.
compound source
symmetry
R_factor
R_Free 0.2295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.98
ligand CA, EDO, FIO, NH2, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis and screening of a haloacetamidine containing library to identify PAD4 selective inhibitors., Jones JE, Slack JL, Fang P, Zhang X, Subramanian V, Causey CP, Coonrod SA, Guo M, Thompson PR, ACS Chem Biol. 2012 Jan 20;7(1):160-5. Epub 2011 Oct 21. PMID:22004374
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (4dkt.pdb1.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 4DKT
  • CSU: Contacts of Structural Units for 4DKT
  • Structure Factors (132 Kb)
  • Retrieve 4DKT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DKT from S2C, [Save to disk]
  • Re-refined 4dkt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DKT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DKT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DKT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dkt_B] [4dkt_A] [4dkt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DKT
  • Community annotation for 4DKT at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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