4DL6 Human DNA polymerase eta extending primer immediately after cisplatin crosslink (Pt-GG3). date 2012-02-05
authors Zhao, Y., Biertumpfel, C., Gregory, M., Hua, Y., Hanaoka, F., Yang, W.
compound source
symmetry
R_factor
R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand CPT, MG, XG4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of human DNA polymerase eta-mediated chemoresistance to cisplatin., Zhao Y, Biertumpfel C, Gregory MT, Hua YJ, Hanaoka F, Yang W, Proc Natl Acad Sci U S A. 2012 Apr 23. PMID:22529383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4dl6.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 4DL6
  • CSU: Contacts of Structural Units for 4DL6
  • Structure Factors (228 Kb)
  • Retrieve 4DL6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DL6 from S2C, [Save to disk]
  • Re-refined 4dl6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DL6 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DL6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DL6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dl6_P] [4dl6] [4dl6_T] [4dl6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DL6
  • Community annotation for 4DL6 at PDBWiki (http://pdbwiki.org)
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