4DM9 The Crystal Structure of Ubiquitin Carboxy-terminal hydrolase L1 (UCHL1) bound to a tripeptide fluoromethyl ketone Z-VAE(OMe)-FMK date 2012-02-07
authors Davies, C.W., Chaney, J., Korbel, G., Ringe, D., Petsko, G.A., Ploegh, H., Das, C.
compound source
symmetry
R_factor
R_Free 0.2502
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand CF0, GME, PHQ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • axonal transport of mitochon...

    • Primary referenceThe co-crystal structure of ubiquitin carboxy-terminal hydrolase L1 (UCHL1) with a tripeptide fluoromethyl ketone (Z-VAE(OMe)-FMK)., Davies CW, Chaney J, Korbel G, Ringe D, Petsko GA, Ploegh H, Das C, Bioorg Med Chem Lett. 2012 Jun 15;22(12):3900-4. Epub 2012 May 4. PMID:22617491
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (4dm9.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (4dm9.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 4DM9
  • CSU: Contacts of Structural Units for 4DM9
  • Structure Factors (143 Kb)
  • Retrieve 4DM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DM9 from S2C, [Save to disk]
  • Re-refined 4dm9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 4DM9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DM9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dm9_B] [4dm9_Y] [4dm9_A] [4dm9] [4dm9_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DM9
  • Community annotation for 4DM9 at PDBWiki (http://pdbwiki.org)
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