4DND Transport Protein date Feb 08, 2012
title Crystal Structure Of Syntaxin 10 From Homo Sapiens
authors V.N.Malashkevich, R.Bhosle, R.Toro, R.Seidel, S.C.Almo, New York Structural Genomics Research Consortium (Nysgrc)
compound source
Molecule: Syntaxin-10
Chain: A
Fragment: Cytoplasmic Topological Domain Residues 1-108
Synonym: Syn10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Bronx
Gene: Aac05087.1, Stx10, Syn10
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 1 21 1
R_factor 0.162 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
22.186 58.733 36.518 90.00 100.21 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4dnd.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4DND
  • CSU: Contacts of Structural Units for 4DND
  • Structure Factors (229 Kb)
  • Retrieve 4DND in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DND from S2C, [Save to disk]
  • Re-refined 4dnd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DND in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DND
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DND, from MSDmotif at EBI
  • Fold representative 4dnd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dnd_A] [4dnd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DND
  • Community annotation for 4DND at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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