4DNL Transferase date Feb 08, 2012
title Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha From Homo Sapiens At 1.90 A Resolution
authors Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Tcell)
compound source
Molecule: Protein Kinase C Alpha Type
Chain: A
Fragment: C2 Domain Residues 155-293
Synonym: Pkc-A, Pkc-Alpha
Ec: 2.7.11.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nm_002737, Pkca, Prkaca, Prkca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hk100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: P 32 2 1
R_factor 0.186 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.035 58.035 88.714 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand MSE, NA enzyme Transferase E.C.2.7.11.13 BRENDA
Gene NM
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4dnl.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 4DNL
  • CSU: Contacts of Structural Units for 4DNL
  • Structure Factors (2410 Kb)
  • Retrieve 4DNL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DNL from S2C, [Save to disk]
  • Re-refined 4dnl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DNL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DNL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DNL, from MSDmotif at EBI
  • Fold representative 4dnl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dnl_A] [4dnl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DNL: [C2 ] by SMART
  • Other resources with information on 4DNL
  • Community annotation for 4DNL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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