4DNU Crystal structure of the W285A mutant of UVB-resistance protein UVR8 date 2012-02-09
authors Wu, D., Hu, Q., Yan, Z., Chen, W., Yan, C., Zhang, J., Wang, J., Shi, Y.
compound source
symmetry
R_factor
R_Free 0.1685
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.76
ligand MSE enzyme
note 4DNU is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of ultraviolet-B perception by UVR8., Wu D, Hu Q, Yan Z, Chen W, Yan C, Huang X, Zhang J, Yang P, Deng H, Wang J, Deng X, Shi Y, Nature. 2012 Feb 29;484(7393):214-9. doi: 10.1038/nature10931. PMID:22388820
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (4dnu.pdb1.gz) 258 Kb
  • Biological Unit Coordinates (4dnu.pdb2.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 4DNU
  • CSU: Contacts of Structural Units for 4DNU
  • Structure Factors (1413 Kb)
  • Retrieve 4DNU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DNU from S2C, [Save to disk]
  • Re-refined 4dnu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DNU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DNU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DNU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dnu_A] [4dnu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DNU
  • Community annotation for 4DNU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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