4DO0 Crystal Structure of human PHF8 in complex with Daminozide date
authors Krojer, T., Daniel, M., Ng, S.S., Walport, L.J., Chowdhury, R., Arrowsmith, C.H., Edwards, A., Bountra, C., Kawamura, A., Muller-Knapp, S., McDonough, M.A., Delft, F.von., Schofield, C.J., Oppermann, U., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.26481
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand ACT, DZA, EDO, SO4, ZN BindingDB enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (4do0.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 4DO0
  • CSU: Contacts of Structural Units for 4DO0
  • Structure Factors (298 Kb)
  • Retrieve 4DO0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DO0 from S2C, [Save to disk]
  • Re-refined 4do0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DO0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DO0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DO0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4do0_A] [4do0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DO0: [JmjC ] by SMART
    • Other resources with information on 4DO0
  • Community annotation for 4DO0 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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