4DOC date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, DOC, G1C, MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencebeta,gamma-CHF- and beta,gamma-CHCl-dGTP Diastereomers: Synthesis, Discrete (31)P NMR Signatures, and Absolute Configurations of New Stereochemical Probes for DNA Polymerases., Wu Y, Zakharova VM, Kashemirov BA, Goodman MF, Batra VK, Wilson SH, McKenna CE, J Am Chem Soc. 2012 May 30;134(21):8734-7. Epub 2012 May 18. PMID:22397499
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (4doc.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 4DOC
  • CSU: Contacts of Structural Units for 4DOC
  • Structure Factors (296 Kb)
  • Retrieve 4DOC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DOC from S2C, [Save to disk]
  • Re-refined 4doc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DOC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4doc] [4doc_A] [4doc_D] [4doc_P] [4doc_T]
  • SWISS-PROT database:
  • Domains found in 4DOC: [HhH1] [POLXc ] by SMART

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