4DOU Hormone date Feb 10, 2012
title Crystal Structure Of A Single-Chain Trimer Of Human Adiponec Globular Domain
authors X.Min, N.P.Walker, Z.Wang
compound source
Molecule: Adiponectin
Chain: A
Fragment: Unp Residues 104-244
Synonym: 30 Kda Adipocyte Complement-Related Protein,Adipoc Complement-Related 30 Kda Protein,Acrp30,Adipocyte,C1q And Domain-Containing Protein,Adipose Most Abundant Gene Transc Protein,Apm-1,Gelatin-Binding Protein,30 Kda Adipocyte Comp Related Protein, Adipocyte Complement-Related 30 Kda Protei Adipocyte, C1q And Collagen Domain-Containing Protein, Adip Abundant Gene Transcript 1 Protein, Apm-1, Gelatin-Binding
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human, Human
Organism_taxid: 9606
Gene: Adipoq, Acdc, Acrp30, Apm1, Gbp28, Acdc, Acrp30, Adip Adipoq, Apm1, Gbp28;
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor 0.200 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.310 49.630 50.460 117.23 101.68 105.31
method X-Ray Diffractionresolution 2.00 Å
ligand CA, EDO, GOL, NA enzyme
Primary referenceCrystal structure of a single-chain trimer of human adiponectin globular domain., Min X, Lemon B, Tang J, Liu Q, Zhang R, Walker N, Li Y, Wang Z, FEBS Lett. 2012 Mar 23;586(6):912-7. Epub 2012 Feb 22. PMID:22449980
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (4dou.pdb1.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 4DOU
  • CSU: Contacts of Structural Units for 4DOU
  • Structure Factors (884 Kb)
  • Retrieve 4DOU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DOU from S2C, [Save to disk]
  • Re-refined 4dou structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DOU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DOU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DOU, from MSDmotif at EBI
  • Fold representative 4dou from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dou_A] [4dou]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DOU: [C1Q ] by SMART
  • Other resources with information on 4DOU
  • Community annotation for 4DOU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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