4DP9 The 1.00 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin A at pH 6.0 date
authors Kachalova, G.S., Shosheva, A.H., Bourenkov, G.P., Donchev, A.A., Dimitrov, M.I., Bartunik, H.D.
compound source
symmetry
R_factor
R_Free 0.14397
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.00
ligand CU enzyme
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceStructural comparison of the poplar plastocyanin isoforms PCa and PCb sheds new light on the role of the copper site geometry in interactions with redox partners in oxygenic photosynthesis., Kachalova GS, Shosheva AC, Bourenkov GP, Donchev AA, Dimitrov MI, Bartunik HD, J Inorg Biochem. 2012 Oct;115:174-81. doi: 10.1016/j.jinorgbio.2012.07.015. Epub , 2012 Jul 20. PMID:22883960
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (4dp9.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 4DP9
  • CSU: Contacts of Structural Units for 4DP9
  • Structure Factors (516 Kb)
  • Retrieve 4DP9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DP9 from S2C, [Save to disk]
  • Re-refined 4dp9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DP9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DP9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DP9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dp9_X] [4dp9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DP9
  • Community annotation for 4DP9 at PDBWiki (http://pdbwiki.org)

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