OCA Atlas for 4DR5

4DR5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

0TD, 2MG, 4OC, 5MC, 7MG, M2G, MA6, MG, PSU, SRY, UR3, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U

Primary reference

A structural basis for streptomycin-induced misreading of the genetic code., Demirci H, Murphy F 4th, Murphy E, Gregory ST, Dahlberg AE, Jogl G, Nat Commun. 2013 Jan 15;4:1355. doi: 10.1038/ncomms2346. PMID:23322043

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2249 Kb) [Save to disk]

Biological Unit Coordinates (4dr5.pdb1.gz) 2206 Kb

LPC: Ligand-Protein Contacts for 4DR5

CSU: Contacts of Structural Units for 4DR5

Structure Factors (1530 Kb)

Retrieve 4DR5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4DR5 from S2C, [Save to disk]

Re-refined 4dr5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DR5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4dr5] [4dr5_A] [4dr5_B] [4dr5_C] [4dr5_D] [4dr5_E] [4dr5_F] [4dr5_G] [4dr5_H] [4dr5_I] [4dr5_J] [4dr5_K] [4dr5_L] [4dr5_M] [4dr5_N] [4dr5_O] [4dr5_P] [4dr5_Q] [4dr5_R] [4dr5_S] [4dr5_T] [4dr5_U] [4dr5_V] [4dr5_W]

SWISS-PROT database:

Domains found in 4DR5: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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