4DRJ Isomerase Transferase date Feb 17, 2012
title O-Crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamyci Frb Fragment Of Mtor
authors A.M.Maerz, A.Bracher, F.Hausch
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Fkbp4
Chain: A
Fragment: Fk1 Domain, Unp Residues 1-140
Synonym: Ppiase Fkbp4, 51 Kda Fk506-Binding Protein, Fkbp51 Fk506-Binding Protein, 52 Kda Fkbp, Fkbp-52, 59 Kda Immunop P59, Fk506-Binding Protein 4, Fkbp-4, Fkbp59, Hsp-Binding Immunophilin, Hbi, Immunophilin Fkbp52, Rotamase, Peptidyl- Cis-Trans Isomerase Fkbp4, N-Terminally Processed;
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fkbp4, Fkbp52
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Hta

Molecule: Serinethreonine-Protein Kinase Mtor
Chain: B
Fragment: Frb Domain, Unp Residues 2025-2114
Synonym: Fk506-Binding Protein 12-Rapamycin Complex-Associa Protein 1, Fkbp12-Rapamycin Complex-Associated Protein, Mam Target Of Rapamycin, Mtor, Mechanistic Target Of Rapamycin, And Fkbp12 Target 1, Rapamycin Target Protein 1;
Ec: 2.7.11.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Frap, Frap1, Frap2, Mtor, Raft1, Rapt1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Hta
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.523 62.989 70.142 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand RAP, SO4 BindingDB enzyme Isomerase E.C.5.2.1.8 BRENDA
Primary referenceLarge FK506-binding Proteins Shape the Pharmacology of Rapamycin., Marz AM, Fabian AK, Kozany C, Bracher A, Hausch F, Mol Cell Biol. 2013 Jan 28. PMID:23358420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (4drj.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 4DRJ
  • CSU: Contacts of Structural Units for 4DRJ
  • Structure Factors (334 Kb)
  • Retrieve 4DRJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DRJ from S2C, [Save to disk]
  • Re-refined 4drj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DRJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DRJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DRJ, from MSDmotif at EBI
  • Fold representative 4drj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4drj_B] [4drj_A] [4drj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DRJ: [Rapamycin_bind ] by SMART
  • Other resources with information on 4DRJ
  • Community annotation for 4DRJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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