4DS7 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL, SO4, SR enzyme
note 4DS7 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
B, C, D, A


Primary referenceThe molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling., Viswanath S, Bonomi M, Kim SJ, Klenchin VA, Taylor KC, Yabut KC, Umbreit NT, Van Epps HA, Meehl J, Jones MH, Russel D, Velazquez-Muriel JA, Winey M, Rayment I, Davis TN, Sali A, Muller EG, Mol Biol Cell. 2017 Aug 16. pii: mbc.E17-06-0397. doi: 10.1091/mbc.E17-06-0397. PMID:28814505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (4ds7.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (4ds7.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (4ds7.pdb3.gz) 118 Kb
  • Biological Unit Coordinates (4ds7.pdb4.gz) 60 Kb
  • Biological Unit Coordinates (4ds7.pdb5.gz) 61 Kb
  • Biological Unit Coordinates (4ds7.pdb6.gz) 240 Kb
  • LPC: Ligand-Protein Contacts for 4DS7
  • CSU: Contacts of Structural Units for 4DS7
  • Structure Factors (581 Kb)
  • Retrieve 4DS7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DS7 from S2C, [Save to disk]
  • Re-refined 4ds7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DS7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ds7] [4ds7_A] [4ds7_B] [4ds7_C] [4ds7_D] [4ds7_E] [4ds7_F] [4ds7_G] [4ds7_H]
  • SWISS-PROT database:
  • Domain found in 4DS7: [EFh ] by SMART

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