4DTJ RB69 DNA Polymerase Ternary Complex with dTTP Opposite an Abasic Site and ddT/dA as the Penultimate Base-pair date 2012-02-21
authors Xia, S., Wang, J., Konigsberg, W.H.
compound source
symmetry
R_factor
R_Free 0.20204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 3DR, CA, TTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


  • Primary referenceContribution of Partial Charge Interactions and Base-Stacking to the Efficiency of Primer-Extension at and beyond Abasic Sites in DNA., Xia S, Vashishtha AK, Bulkley D, Eom SH, Wang J, Konigsberg WH, Biochemistry. 2012 May 25. PMID:22630605
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]
  • Biological Unit Coordinates (4dtj.pdb1.gz) 336 Kb
  • LPC: Ligand-Protein Contacts for 4DTJ
  • CSU: Contacts of Structural Units for 4DTJ
  • Structure Factors (1335 Kb)
  • Retrieve 4DTJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DTJ from S2C, [Save to disk]
  • Re-refined 4dtj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DTJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dtj_T] [4dtj] [4dtj_A] [4dtj_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DTJ: [POLBc ] by SMART
  • Other resources with information on 4DTJ
  • Community annotation for 4DTJ at PDBWiki (http://pdbwiki.org)
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