4DTR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 3DR, CA, DOC, DTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


    • Primary referenceContribution of Partial Charge Interactions and Base-Stacking to the Efficiency of Primer-Extension at and beyond Abasic Sites in DNA., Xia S, Vashishtha AK, Bulkley D, Eom SH, Wang J, Konigsberg WH, Biochemistry. 2012 May 25. PMID:22630605
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (344 Kb) [Save to disk]
  • Biological Unit Coordinates (4dtr.pdb1.gz) 337 Kb
  • LPC: Ligand-Protein Contacts for 4DTR
  • CSU: Contacts of Structural Units for 4DTR
  • Structure Factors (1087 Kb)
  • Retrieve 4DTR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DTR from S2C, [Save to disk]
  • Re-refined 4dtr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DTR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dtr] [4dtr_A] [4dtr_P] [4dtr_T]
  • SWISS-PROT database:
  • Domain found in 4DTR: [POLBc ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science