4DTR RB69 DNA Polymerase Ternary Complex with dATP Opposite an Abasic Site and ddC/dG as the Penultimate Base-pair date 2012-02-21
authors Xia, S., Wang, J., Konigsberg, W.H.
compound source
symmetry
R_factor
R_Free 0.22833
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.04
ligand 3DR, CA, DOC, DTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


  • Primary referenceContribution of Partial Charge Interactions and Base-Stacking to the Efficiency of Primer-Extension at and beyond Abasic Sites in DNA., Xia S, Vashishtha AK, Bulkley D, Eom SH, Wang J, Konigsberg WH, Biochemistry. 2012 May 25. PMID:22630605
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (351 Kb) [Save to disk]
  • Biological Unit Coordinates (4dtr.pdb1.gz) 345 Kb
  • LPC: Ligand-Protein Contacts for 4DTR
  • CSU: Contacts of Structural Units for 4DTR
  • Structure Factors (1087 Kb)
  • Retrieve 4DTR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DTR from S2C, [Save to disk]
  • Re-refined 4dtr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DTR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dtr_A] [4dtr_T] [4dtr_P] [4dtr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DTR: [POLBc ] by SMART
  • Other resources with information on 4DTR
  • Community annotation for 4DTR at PDBWiki (http://pdbwiki.org)
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