4DUS	Structure of Bace-1 (Beta-Secretase) in complex with N-((2S,3R)-1-(4-fluorophenyl)-3-hydroxy-4-((6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridin]-4'-yl)amino)butan-2-yl)acetamide	date	2012-02-22
authors	Sickmier, E.A.
compound		source
symmetry		R_factor R_Free 0.2891
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.50
ligand	0MP, GOL, IOD BindingDB	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	A Potent and Orally Efficacious, Hydroxyethylamine-Based Inhibitor of beta-Secretase., Kaller MR, Harried SS, Albrecht B, Amarante P, Babu-Khan S, Bartberger MD, Brown J, Brown R, Chen K, Cheng Y, Citron M, Croghan MD, Graceffa R, Hickman D, Judd T, Kriemen C, La D, Li V, Lopez P, Luo Y, Masse C, Monenschein H, Nguyen T, Pennington LD, Miguel TS, Sickmier EA, Wahl RC, Weiss MM, Wen PH, Williamson T, Wood S, Xue M, Yang B, Zhang J, Patel V, Zhong W, Hitchcock S, ACS Med Chem Lett. 2012 Mar 29;3(11):886-91. doi: 10.1021/ml3000148. eCollection , 2012 Nov 8. PMID:24900403

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (4dus.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 4DUS CSU: Contacts of Structural Units for 4DUS Structure Factors (272 Kb) Retrieve 4DUS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4DUS from S2C, [Save to disk] Re-refined 4dus structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DUS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4DUS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4DUS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4dus] [4dus_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4DUS

Community annotation for 4DUS at PDBWiki (http://pdbwiki.org)

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Images from IMB Jena Image Library of Biological Macromolecules.

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