4DV3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 0TD, 2MG, 4OC, 5MC, 7MG, M2G, MA6, MG, PSU, SRY, UR3, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2247 Kb) [Save to disk]
  • Biological Unit Coordinates (4dv3.pdb1.gz) 2206 Kb
  • LPC: Ligand-Protein Contacts for 4DV3
  • CSU: Contacts of Structural Units for 4DV3
  • Structure Factors (3756 Kb)
  • Retrieve 4DV3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DV3 from S2C, [Save to disk]
  • Re-refined 4dv3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DV3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dv3] [4dv3_A] [4dv3_B] [4dv3_C] [4dv3_D] [4dv3_E] [4dv3_F] [4dv3_G] [4dv3_H] [4dv3_I] [4dv3_J] [4dv3_K] [4dv3_L] [4dv3_M] [4dv3_N] [4dv3_O] [4dv3_P] [4dv3_Q] [4dv3_R] [4dv3_S] [4dv3_T] [4dv3_U]
  • SWISS-PROT database:
  • Domains found in 4DV3: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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