4DVR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 0LY, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
G


Primary referenceCrystal Structures of HIV-1 gp120 Envelope Glycoprotein in Complex with NBD Analogues That Target the CD4-Binding Site., Kwon YD, Lalonde JM, Yang Y, Elban MA, Sugawara A, Courter JR, Jones DM, Smith AB 3rd, Debnath AK, Kwong PD, PLoS One. 2014 Jan 28;9(1):e85940. doi: 10.1371/journal.pone.0085940. eCollection, 2014. PMID:24489681
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (4dvr.pdb1.gz) 239 Kb
  • LPC: Ligand-Protein Contacts for 4DVR
  • CSU: Contacts of Structural Units for 4DVR
  • Structure Factors (190 Kb)
  • Retrieve 4DVR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DVR from S2C, [Save to disk]
  • Re-refined 4dvr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DVR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dvr] [4dvr_G] [4dvr_H] [4dvr_L]
  • SWISS-PROT database:
  • Domains found in 4DVR: [IG_like] [IGv ] by SMART

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