4DWB	Crystal structure of Trypanosoma cruzi farnesyl diphosphate synthase in complex with [2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic acid and Mg2+	date	2012-02-24
authors	Aripirala, S., Amzel, L.M., Gabelli, S.B.
compound		source
symmetry		R_factor R_Free 0.2789
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.10
ligand	0M7, ACT, IPE, MG, NA, SO4 BindingDB	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Design, synthesis, calorimetry, and crystallographic analysis of 2-alkylaminoethyl-1,1-bisphosphonates as inhibitors of Trypanosoma cruzi farnesyl diphosphate synthase., Aripirala S, Szajnman SH, Jakoncic J, Rodriguez JB, Docampo R, Gabelli SB, Amzel LM, J Med Chem. 2012 Jul 26;55(14):6445-54. Epub 2012 Jul 5. PMID:22715997

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (4dwb.pdb1.gz) 120 Kb LPC: Ligand-Protein Contacts for 4DWB CSU: Contacts of Structural Units for 4DWB Structure Factors (292 Kb) Retrieve 4DWB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4DWB from S2C, [Save to disk] Re-refined 4dwb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DWB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4DWB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4DWB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4dwb_A] [4dwb] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4DWB

Community annotation for 4DWB at PDBWiki (http://pdbwiki.org)

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