OCA Atlas for 4DXD

4DXD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

9PC, GDP

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Restoring methicillin-resistant Staphylococcus aureus susceptibility to beta-lactam antibiotics., Tan CM, Therien AG, Lu J, Lee SH, Caron A, Gill CJ, Lebeau-Jacob C, Benton-Perdomo L, Monteiro JM, Pereira PM, Elsen NL, Wu J, Deschamps K, Petcu M, Wong S, Daigneault E, Kramer S, Liang L, Maxwell E, Claveau D, Vaillancourt J, Skorey K, Tam J, Wang H, Meredith TC, Sillaots S, Wang-Jarantow L, Ramtohul Y, Langlois E, Landry F, Reid JC, Parthasarathy G, Sharma S, Baryshnikova A, Lumb KJ, Pinho MG, Soisson SM, Roemer T, Sci Transl Med. 2012 Mar 21;4(126):126ra35. PMID:22440737

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]

Biological Unit Coordinates (4dxd.pdb1.gz) 46 Kb

LPC: Ligand-Protein Contacts for 4DXD

CSU: Contacts of Structural Units for 4DXD

Structure Factors (369 Kb)

Retrieve 4DXD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4DXD from S2C, [Save to disk]

Re-refined 4dxd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DXD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4dxd] [4dxd_A]

SWISS-PROT database:

Domains found in 4DXD: [Tubulin] [Tubulin_C ] by SMART

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