4DY1		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CL, ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	What Glues a Homodimer Together: Systematic Analysis of the Stabilizing Effect of an Aromatic Hot Spot in the Protein-Protein Interface of the tRNA-Modifying Enzyme Tgt., Jakobi S, Nguyen PT, Debaene F, Cianferani S, Reuter K, Klebe G, ACS Chem Biol. 2015 Aug 21;10(8):1897-907. doi: 10.1021/acschembio.5b00028. Epub , 2015 May 26. PMID:25951081

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (4dy1.pdb1.gz) 130 Kb LPC: Ligand-Protein Contacts for 4DY1 CSU: Contacts of Structural Units for 4DY1 Structure Factors (808 Kb) Retrieve 4DY1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4DY1 from S2C, [Save to disk] Re-refined 4dy1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DY1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4dy1] [4dy1_A] SWISS-PROT database:

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