4DY7 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACT, CA, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


F, C
  • serine-type endopeptidase in...


    • Primary referenceCrystal structures of protease nexin-1 in complex with heparin and thrombin suggest a 2-step recognition mechanism., Li W, Huntington JA, Blood. 2012 Jul 12;120(2):459-67. Epub 2012 May 22. PMID:22618708
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]
  • Biological Unit Coordinates (4dy7.pdb1.gz) 104 Kb
  • Biological Unit Coordinates (4dy7.pdb2.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 4DY7
  • CSU: Contacts of Structural Units for 4DY7
  • Structure Factors (615 Kb)
  • Retrieve 4DY7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DY7 from S2C, [Save to disk]
  • Re-refined 4dy7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DY7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dy7] [4dy7_A] [4dy7_B] [4dy7_C] [4dy7_D] [4dy7_E] [4dy7_F]
  • SWISS-PROT database:
  • Domains found in 4DY7: [SERPIN] [Tryp_SPc ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science