4DY8 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MN enzyme
Primary referenceInteractions of Mn(2+) with a non-self-complementary Z-type DNA duplex., Mandal PK, Venkadesh S, Gautham N, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Dec 1;68(Pt 12):1420-6., doi: 10.1107/S1744309112041759. Epub 2012 Nov 14. PMID:23192018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (4dy8.pdb1.gz) 5 Kb
  • Biological Unit Coordinates (4dy8.pdb2.gz) 2 Kb
  • LPC: Ligand-Protein Contacts for 4DY8
  • CSU: Contacts of Structural Units for 4DY8
  • Structure Factors (43 Kb)
  • Retrieve 4DY8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DY8 from S2C, [Save to disk]
  • Re-refined 4dy8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DY8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dy8] [4dy8_A] [4dy8_B] [4dy8_C] [4dy8_D]
  • SWISS-PROT database:

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