4DZ2 Crystal structure of a Peptidyl-prolyl cis-trans isomerase with surface mutation R92G from Burkholderia pseudomallei complexed with FK506 date
authors SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand CA, FK5 enzyme
Gene BURPS1710B
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peptidyl-prolyl cis-trans is...


  • Primary referenceA structural biology approach enables the development of antimicrobials targeting bacterial immunophilins., Begley DW, Fox D 3rd, Jenner D, Juli C, Pierce PG, Abendroth J, Muruthi M, Safford K, Anderson V, Atkins K, Barnes SR, Moen SO, Raymond AC, Stacy R, Myler PJ, Staker BL, Harmer NJ, Norville IH, Holzgrabe U, Sarkar-Tyson M, Edwards TE, Lorimer DD, Antimicrob Agents Chemother. 2014 Mar;58(3):1458-67. doi: 10.1128/AAC.01875-13., Epub 2013 Dec 23. PMID:24366729
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (4dz2.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (4dz2.pdb2.gz) 77 Kb
  • Biological Unit Coordinates (4dz2.pdb3.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 4DZ2
  • CSU: Contacts of Structural Units for 4DZ2
  • Structure Factors (300 Kb)
  • Retrieve 4DZ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DZ2 from S2C, [Save to disk]
  • Re-refined 4dz2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DZ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DZ2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DZ2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dz2] [4dz2_A] [4dz2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DZ2
  • Community annotation for 4DZ2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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