4E0Y Dna Binding Protein Dna date Mar 05, 2012
title Protelomerase Tela Covalently Complexed With Mutated Substra
authors K.Shi, H.Aihara
compound source
Molecule: Protelomerase
Chain: A
Engineered: Yes
Organism_scientific: Agrobacterium Tumefaciens
Organism_taxid: 176299
Strain: C58 Atcc 33970
Gene: Tela, Atu2523
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpaptpapaptpapapcpapaptpap
Chain: C
Engineered: Yes

Synthetic: Yes

Molecule: Dna (5'- D(Cpcpaptpgpaptpaptptpgptptpaptptpaptpg)
Chain: D
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.216 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.984 119.442 56.922 90.00 112.42 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand DT, GOL, PTR enzyme
Primary referenceAn enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation., Shi K, Huang WM, Aihara H, PLoS Biol. 2013 Jan;11(1):e1001472. doi: 10.1371/journal.pbio.1001472. Epub 2013 , Jan 29. PMID:23382649
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (4e0y.pdb1.gz) 273 Kb
  • LPC: Ligand-Protein Contacts for 4E0Y
  • CSU: Contacts of Structural Units for 4E0Y
  • Structure Factors (200 Kb)
  • Retrieve 4E0Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E0Y from S2C, [Save to disk]
  • Re-refined 4e0y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E0Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E0Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4E0Y, from MSDmotif at EBI
  • Fold representative 4e0y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e0y] [4e0y_A] [4e0y_D] [4e0y_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4E0Y
  • Community annotation for 4E0Y at PDBWiki (http://pdbwiki.org)

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