4E3C Transferase date Mar 09, 2012
title X-Ray Crystal Structure Of Human Ikk2 In An Active Conformat
authors S.Polley, D.B.Huang, A.V.Hauenstein, G.Ghosh, T.Huxford
compound source
Molecule: Inhibitor Of Nuclear Factor Kappa-B Kinase Subuni
Chain: A, B, C, D, E, F
Fragment: Unp Residues 11-669
Synonym: I-Kappa-B-Kinase Beta, Ikk-B, Ikk-Beta, Ikbkb, I-K Kinase 2, Ikk2, Nuclear Factor Nf-Kappa-B Inhibitor Kinase Nfkbikb;
Ec: 2.7.11.10
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ikbkb, Ikkb
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac Htb
symmetry Space Group: P 41 2 2
R_factor 0.267 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
170.810 170.810 509.560 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.98 Å
ligand
enzyme Transferase E.C.2.7.11.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (573 Kb) [Save to disk]
  • Biological Unit Coordinates (4e3c.pdb1.gz) 192 Kb
  • Biological Unit Coordinates (4e3c.pdb2.gz) 194 Kb
  • Biological Unit Coordinates (4e3c.pdb3.gz) 193 Kb
  • CSU: Contacts of Structural Units for 4E3C
  • Structure Factors (579 Kb)
  • Retrieve 4E3C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E3C from S2C, [Save to disk]
  • Re-refined 4e3c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E3C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E3C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4E3C, from MSDmotif at EBI
  • Fold representative 4e3c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e3c_A] [4e3c_F] [4e3c] [4e3c_D] [4e3c_C] [4e3c_B] [4e3c_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4E3C: [STYKc ] by SMART
  • Other resources with information on 4E3C
  • Community annotation for 4E3C at PDBWiki (http://pdbwiki.org)

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